PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G050100.1
Common NameB456_013G050100, LOC105783982
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 264aa    MW: 28181.2 Da    PI: 7.8616
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G050100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002595117123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ C+k F++   L  H  +H
  Gorai.013G050100.1  95 YKCSVCDKAFPSYQALGGHKASH 117
                         9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.7E-1495119IPR007087Zinc finger, C2H2
SuperFamilySSF576671.15E-995117No hitNo description
PROSITE profilePS501579.84795117IPR007087Zinc finger, C2H2
SMARTSM003550.006395117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SuperFamilySSF576671.15E-9148175No hitNo description
PfamPF139123.1E-13153177IPR007087Zinc finger, C2H2
SMARTSM003550.19153175IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411153175IPR007087Zinc finger, C2H2
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MALEALNSPA TPFTNKYDDV DNNYVETWKK GKRSKRQRGD SPAAVELQPT TEEEYLALCL  60
IMLARGSSGA DLDVIRRSSS SSSPPPPPPA LKLSYKCSVC DKAFPSYQAL GGHKASHRKP  120
LSADAATTTA AANVDNPSTT STATTATSSG RLHECSICHK SFPTGQALGG HKRCHYEGGN  180
NNNNNNKNNN NSGSVSVSGV TSSDGGALSH NHRAVDFDFD LNLPALPEFS QMYPDEEEVQ  240
SPLPTKKPRF LIAKKEKLDS SLA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5277540.0HQ527754.1 Gossypium herbaceum clone NBRI_D_4752 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465164.10.0PREDICTED: zinc finger protein ZAT10
SwissprotQ962891e-66ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLA0A0D2VAT50.0A0A0D2VAT5_G
STRINGVIT_18s0001g09230.t012e-72(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-51salt tolerance zinc finger
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]